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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … at the University of California, Davis and UC Santa Barbara generated a list of prokaryotes with fermentative metabolism …
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An Automated Tool for Assessing Virus Data Quality
… virus sequence fragments and data quality. The Science Through advances in sequencing technologies and computational … (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … perform functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps …
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Exploring the Diversity of the American Prairie’s Switchgrass
A tall native plant of the North American prairie, switchgrass ( Panicum … traits — height, biomass, hardiness to cold, etc. — to its genes. The undertaking took shovels, trucks — and more than …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … contains about 6% of the human genome . They discovered genes linked to conditions such as cardiovascular disease, …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the journal Science . … they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across … University campuses for biotechnology education as part of a course-based undergraduate resource experience. Hear …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … and a specific microbial host to replicate. Sequencing genetic material directly from samples sidesteps these …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … each variety stores sugars and sequesters carbon. 2015: Epigenetic Control of Drought Tolerance in Sorghum (EPICON) …
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JGI Announces 2023 Community Science Program Awardees
Congratulations to the proposers of the 19 proposals selected … This year’s annual CSP call had five areas of emphasis: genes to function, plant and algal functional genomics, …
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that … orange. Otherwise known as  Poncirus trifoliata , it’s an evolutionary cousin of the  Citrus genus, which gives us … annotating and analyzing the genome in order to find the genetic traits responsible for  P. trifoliata ’s hardiness, …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and giant viruses. While the … more than 8,500 publicly available metagenome datasets generated from sampling sites around the world, including …
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Toward More Efficient Artificial Photosynthesis
Chloroplast mimic a platform to capture and utilize carbon in a … (MPI) for Terrestrial Microbiology and the University of Bordeaux have developed a platform that mimics … carbon captured from the atmosphere in a process that generates energy. The MPI team ultimately aims to develop an …
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