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Transcriptional response of the white-rot fungus Dichomitus squalens to polysaccharides reveals a co-expression network of plant biomass conversion related genes
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The Exometabolome of Xylella fastidiosa in Contact with Paraburkholderia phytofirmans Supernatant Reveals Changes in Nicotinamide, Amino Acids, Biotin, and Plant Hormones
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and … 1) Complete Sample Metadata form Sample metadata is collected via …
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JGI@25: Roots of a Mutualist Relationship
… notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … Laccaria bicolor has a symbiotic relationship with poplar …
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Steven Wilson
… 2018, Mr. Wilson has served as the Systems Engineering Group lead.   The group is responsible for developing and supporting applications … the JGI as an Instrumentation Engineer where he added structure and process to the group by developing SOPs for …
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Trent Northen
… joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and … Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes …
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Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution
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Novel Hydrophobins from Trichoderma Define a New Hydrophobin Subclass: Protein Properties, Evolution, Regulation and Processing
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Multiple Origins and Rapid Evolution of Duplicated Mitochondrial Genes in Parthenogenetic Geckos (Heteronotia binoei; Squamata, Gekkonidae)
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Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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