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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … 2018 Senior Editor: Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
As set out in the JGI Five-Year Strategic Plan – “Beyond Basepairs, A Vision … and  Collaborative Genome Science” – through early introduction to the resources and disciplines advanced by the JGI, we …
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The Big Deal About Short Plants
Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… at the conference venue This inaugural event will bring together researchers across major ecosystems and disciplines … laboratory ecosystems to help transition microbiome science from largely observational to reproducible mechanistic studies.  This conference is inspired by …
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Exploring the Diversity of the American Prairie’s Switchgrass
… ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. So, a team of scientists made an ambitious plan to begin to link the … cold, etc. — to its genes. The undertaking took shovels, trucks — and more than a decade.  …
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Kanwar Singh
Kanwar spends part of his time assisting JGI users by processing their single cell samples using our …
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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, genome …
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SIPs with Standards
Stable Isotope Probing (SIP) is a powerful technique for studying … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … make this technique, SIP, more standardized -- more reproducible, more reusable, and more insightful, for the future …
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JGI-USCCN Strain Sequencing Opportunity
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Hiroshi Otani
… facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and … in understanding how, when and why microbes decide to produce which metabolites. … BS, Engineering, Tokyo Institute of …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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Uri Neri
… days wrangling viral genomes and occasionally remembering to document his code. At JGI, he develops tools for viral discovery and analysis, with a particular …
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