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Learning to Look
… learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to … replication and integration. The researchers also learned how an inovirus’ strategy of integrating itself within a … to avoid CRISPR-Cas immunity. In addition, Borges also showed that inoviruses might prevent new phages from …
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High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India
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Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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The JGI Data Portal: Improving User Experience
… download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only accessible via Phytozome, the improvements it encompasses are more broadly … for various data types or taxa An at-a-glance view of how much data you’ve selected for download, as well as …
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JGI@25: Building a Better Bean
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and … enabled discoveries in additional crops such as peanuts, black-eyed peas, soybeans and chickpeas. While no longer …
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An Automated Tool for Assessing Virus Data Quality
… and identified from environmental samples (metagenomes). However, the quality and completeness of … have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of … viruses and associate them with their microbial hosts. However, assembling viral genomes from metagenomes is …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Computing Sciences site. Lawrence Berkeley National Laboratory (Berkeley Lab), the National Energy Research Scientific … diversity/inclusion by the annual  HPCwire Readers’ and Editors’ Choice Awards . NERSC, JGI, ESnet are U.S. Department … of Energy Office of Science user facilities. The HPCwire Editors Choice Award for Best Use of HPC in Life Sciences went …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently … that could help crop breeders and researchers predict how crops and model organisms may evolve.  Determining the … genome duplication, which occurs in two basic ways. In “autopolyploids”, genome duplication occurs within a single …
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Cultivating Symbiotic Antarctic Microbes
… employed multiple microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are … researchers have been able to gain further insights about how microbes have adapted to thrive in polar ecosystems. The work by …
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Matt Blow
… Genome Assembly, QA/QC, and User Support Analysis teams. Together, these teams provide analysis support and R&D for … editing and cancer genetics. Dr. Blow carried out postdoctoral work at LBNL, where he worked on computational and experimental approaches to study genome regulation in human and other vertebrate …
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Graduate Students Get Thesis Research Opportunity at the JGI
… (SCGSR) program awards graduate students the opportunity to pursue part of their thesis research at one of the DOE national laboratories or national user facilities. As a result of the … launch a pilot project and begin the work of understanding how engineered environments contribute to greenhouse gases,” …
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