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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … genome sequence of a mycorrhizal fungus shifted the focus from looking at single organisms to applying a broader …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key role in determining the composition of the Earth’s atmosphere and regulating the global climate … provided by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … Since one of the challenges of developing alternative fuels from plants is the high cost and resource requirements of …
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JGI announces 2025 Functional Genomics awardees
… [ Pictured from left: [Above] Hao Chen, Matthew Cope-Arguello, … Woolston. ] Each year, the JGI accepts proposals for state-of-the-art functional genomics research from scientists who … synthesis and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions …
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JGIota: Looking Back at Methane-Making Microbes
… gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea breaking down … still producing things like meat, milk, and wool. Hear more from JGI collaborators Sinead Leahy (New Zealand …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral … own food and generate oxygen as a byproduct. The abundance of oxygen shaped the evolution of life on Earth, and led to … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … into multiple interconnected layers. The architecture of these algorithms, inspired by communication networks …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change … impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave event in the ocean known as “The … This work was performed under the auspices of the Scientific Committee on Oceanographic Research …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein identified from … The work conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP allows researchers to go … by weeks of tricky, laborious lab work to analyze samples from one experiment. Starting a  few years ago, researchers …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable research and … scientific collaborations in 2018. The cover is an image of Mono Lake, a saline soda lake east of California’s … Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were sequenced by the JGI (isolates here , …
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JGI on the 2020 Highly Cited Researchers List
… fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 researchers working in 21 fields appear on the list, and those from the JGI are: Kerrie Barry I-Min Chen Igor Grigoriev …
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