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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on a changing …   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days …
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Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis
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Hiroshi Otani
… technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … H, Mouncey NJ. New keys to unlock the treasure trove of microbial natural products. Nat Rev Microbiol. 2021 … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India
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A Powerful Technique to Study Microbes, Now Easier
… project: to bring in robots to help process experiments that measure microbial activity in soil. Now, the researchers and robots …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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The JGI Data Portal: Improving User Experience
… from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten … team. Based on Google Analytics data, the team noticed that a large percentage of Phytozome users who were seeking …
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Katherine Louie
… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … Rocha UN, Shi S, et al. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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The Soil Blooms Green
Every fall, a mysterious green growth appears on top of farmers’ fields: a microbial community that might be quietly improving the soil. Penn State …
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John Vogel
… years where he was a driving force behind the development of numerous genomic resources that fostered the widespread … ISBN: 978-3-319-26942-9 Gordon, et. al. 2014 Genome Diversity in Brachypodium distachyon : Deep Sequencing of … Visiting Fellowship Australia … Education … Selected Publications … Awards and Service …
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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … researchers were able to map the location of genes that provide resistance to the brown rust disease that can … assembly not only includes a full representation of the diversity present in R570 but shows the genomic effects of …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
Ancient  Chloroflexota s ditched their flagella and other traits when … and pH levels vary wildly from spring to spring. These biodiversity hotspots harbor specialized microbial communities living in extreme conditions. The …
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