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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working … hone science presentation skills, and participate in professional development enrichment activities. For some … Merced internship program was founded in 2014 with the goal of inspiring students to embark on a career in genomics and …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s … little makers rely on to survive. Now, new research enabled by the U.S. Department of Energy (DOE) Joint Genome … By leveraging metagenomics to sample the entirety of a microbial community out in its natural environment, …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More … ability to produce their own food and generate oxygen as a byproduct. The abundance of oxygen shaped the evolution of … researchers from the Bigelow Laboratory for Ocean Sciences, Microbial Genome Program head Tanja Woyke of the U.S. …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of … and the focus of a  recent paper published in  Microbial Genomics .   “Studying actinomyces, especially … its Secondary Metabolites research group . That group, led by JGI Director Nigel Mouncey, has launched its  Secondary …
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Matt Blow
… Nottingham University, UK PhD in Genomics, University of Cambridge, UK Postdoctoral training Wellcome Trust Sanger … Price et al 2018. Mutant phenotypes for thousands of bacterial genes of unknown function. Nature 557:503-509. … et al. 2013. Fine Tuning of Craniofacial Morphology by Distant-Acting In Vivo Enhancers. Science 3426157. Blow …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … resources. Q:  Where can I get information for funding by JGI? A: The JGI is not a funding organization. Rather, it … Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell counts or …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … scientists to study microorganisms that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over 27,000 microbial genes. These genes were identified based on their …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … improve the genome’s accuracy, and increase its length by 29.5 Megabasepairs. 2017: Pan-genome analysis of sorghum …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … and their genetic sequences. The software was created by researchers under the direction of Microbiome Data … in soils and water. MGEs like viruses and plasmids drive microbial processes and evolution. This is because MGEs can …
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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … layers. The architecture of these algorithms, inspired by communication networks found in nature, allows machines … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying …
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of Oak Ridge National Laboratory and Elizabeth “Lizzy” … Soil Microbiome SFA. She serves as Secretary within the Microbial Ecology Section of the Ecological Society of …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of the terpene synthase gene family across eucalypt … of the E. grandis reference genome, an international effort by a team that included researchers at the DOE Joint Genome … Sequencing and assembly data carried out by EMBRAPA as part of the  Corymbia  genome project was supported by FAPDF …
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