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Development of a clostridia-based cell-free system for prototyping genetic parts and metabolic pathways
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Genetic variation in PNPLA3 confers susceptibility to nonalcoholic fatty liver disease
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JGI Announces 2023 Community Science Program Awardees
Congratulations to the proposers of the 19 proposals selected for the 2023 Community Science … Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … This year’s annual CSP call had five areas of emphasis: genes to function, plant and algal functional genomics, …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions … (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … et al.  MAGI: A Method for Metabolite Annotation and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. …
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High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus
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Evolution of extreme resistance to ionizing radiation via genetic adaptation of DNA repair
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Genetic determinants of switchgrass-root-associated microbiota in field sites spanning its natural range
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Genetic architecture of floral traits in bee‐ and hummingbird‐pollinated sister species of Aquilegia (columbine)
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Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism
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Trent Northen
… to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the … Genome Engineering Enables Rapid Activation of Biosynthetic Gene Clusters. Nat Microbiol. 4(12):2498-2510. doi: … … Metabolomics Science Program … Education … Selected Publications … Awards and Honors …
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Accelerating Metagenomics Discoveries with Deep Learning
Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 … rather than single cells or isolated strains, is easy to generate, but difficult to assemble and interpret. The … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms …
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Oryzisolibacter propanilivorax gen. nov., sp. nov., a propanil-degrading bacterium
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