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UC Merced Interns Reflect on Their JGI Summer Projects
Over the course of eight weeks this past summer, 10 students from UC Merced worked closely with … using natural language processing techniques to categorize genetic information. Learn more about their work here in a series of …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at … the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his … as a computational biologist. My primary future goal is to form a startup.” …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … help solve energy and environmental challenges. Oh, the magical world of the cow stomach. Rumen – and its microbes – … the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like … draws on the strengths of multiple virus-host prediction methods. In building this program,  described in Plos …
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Better Crops With a Pointillist Approach to Plant Genomics
In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and …
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Exploring the Diversity of the American Prairie’s Switchgrass
A tall native plant of the North American prairie, switchgrass ( … traits — height, biomass, hardiness to cold, etc. — to its genes. The undertaking took shovels, trucks — and more than …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in … they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State University campuses for biotechnology education …
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10 From JGI on the 2019 Highly Cited Researchers List
Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has … 2019 list focused on Highly Cited Papers, defined in the Methodology section as “those that rank in the top 1% by … Genomics Lead Dan Rokhsar, Molecular Biology & Genetics Staff Data Scientist Asaf Salamov, Plant & Animal …
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Tanja Woyke Elected to American Academy of Microbiology
Congratulations to the JGI’s Tanja Woyke , who has been elected … of 2020, selected from 118 nominees. The selection process for AAM Fellows is based on their records of scientific … research focuses on developing and harnessing single-cell methods to access the genetic material of uncultivated …
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Refining the Process of Identifying Algae Biotechnology Candidates
… [subhed -- copy to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems … stresses, and its transcriptome to learn more about which genes expression patterns. The analysis led to the …
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … (NCRR) (5P20RR016480-12) and the National Institute of General Medical Sciences (NIGMS) (8 P20 GM103451-12) from …
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