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2023 Progress Report
Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  … we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global …
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Better Living Through Bioenergy
Biofuels and bioproducts are a way to kick our addiction to fossil … Mukhopadhyay and Steve Singer are harnessing the versatile bacterium Pseudomonas putida to break down biomass and … research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, … And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater … to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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Calculating the Costs of Multiple Switchgrass Gene Copies
Scientists have discovered that the candidate bioenergy feedstock … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … metabolism from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the …
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The Surprising Structure of a Shrub Willow Sex Chromosome
A genetic architecture that is characteristic of the sex chromosomes of mammals is, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to LBS, and DEB-1542599 to M.O.). …
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W. Berkeley Kauffman
Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the development of new applications utilizing a variety of technologies to improve the JGI’s capabilities in the areas of metagenomics, …
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Overview of the Genomes OnLine Database (GOLD)
TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why …
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG …
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Adam Reisselman on being a 2016 DOE Computational Science Graduate Fellow
The Department of Energy's Computational Science Graduate … Adam Riesselman of Harvard University worked with DOE JGI's Sam Deutsch. Learn more about the DOE Computational …
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Gotta Catch 'Em Gall
Kasey Markel and Patrick Shih (UC Berkeley and the Joint … new ways to engineer plants. So they’ve looked into wasps that program oak trees to raise their young in structures … how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these …
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