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2025 Progress Report
… Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, …
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JGI Early Career Researchers Featured in mSystems Special Issue
… what the next five years of innovation could look like. In one article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell sorting (FACS) …
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Reclassification of the Clostridium clostridioforme and Clostridium sphenoides clades as Enterocloster gen. nov. and Lacrimispora gen. nov., including reclassification of 15 taxa.
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Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov.
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… the JGI is sequencing thousands of bacterial and archaeal genomes from diverse branches of the Tree of Life.  Its … 600 genome sequences for Actinobacteria.  Woyke  was also one of three authors on a recent study that made the cover … Schmutz , reveals that C-fern’s size and complexity is not due to whole-genome duplication, as was previously …
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You Can Move, But You Can’t Hide
… Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … Lab), with computing resources provided by NERSC, another user facility at Berkeley Lab. geNomad is now … distinct approaches to identify both viruses and plasmids; one is marker gene-based, and the second is a neural network …
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Teredinibacter haidensis sp. nov., Teredinibacter purpureus sp. nov. and Teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc Bankia setacea (Bivalvia: Teredinidae) and emended
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … ASM Microbe Meeting in Los Angeles, Calif.  Roux is also one of the lead organizers of the Viral EcoGenomics & … microbes and influence how soil ecosystems function. He was one of the eight JGI researchers on the 2023 Highly Cited …
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Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium
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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science … for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic … in developmental and disease processes in the human genome. In addition to his appointment at the DOE Joint …
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What Happens Underground Influences Global Nutrient Cycles
… Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for … a joint research call. Submitted proposals addressed one of the following focus topic areas: Biofuels and … She and her colleagues have generated a high-quality, phenotyped mutant library in Chlamy, as the alga is …
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