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The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata
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The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the … fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by … that led to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across … State University campuses for biotechnology education as part of a course-based undergraduate resource experience. Hear …
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Gut Fungi: Unexpected Source of Novel Chemicals
… The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from aerobic … fungi synthesize molecules that are sources of new chemical diversity; the team identified what looked to be three …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … Schmutz explained, meaning the plant’s reduced genetic diversity makes it easier to genetically manipulate. One … trait. Traditionally beans have had a shelf-life about roughly 6-9 months before their color begins to …
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Draft Genome Sequences of Three Strains of a Novel Rhizobiales Species Isolated from Forest Soil
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Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes
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JGI at the AGU Fall Meeting
… Meeting, with the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): … on Intensive Agricultural Lands Changes Nitrogen Cycling Microbial Communities and Reduces N2O Production Potential …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven … as reliable markers for classifying species and studying diversity in complex biological systems. By making the tools … before this study. A statistical comparison of evolutionary trees built from mitochondrial and nuclear genomes showed …
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Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi
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Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence
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