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Ian Blaby
… where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at University of … Wales, Cardiff, Genetics Ph.D. – University of Cambridge., Microbial molecular biology Post-doctoral positions  – … one. 15: 11. 2020 Blaby & Cheng, Building a custom high-throughput platform at the Joint Genome Institute for DNA …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC … was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of … Cas14 proteins on IMG/M portal …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Podcasts ,  Spotify or wherever you get your podcasts) Microbial ecologist and JGI user Trina McMahon has been … she set out to analyze 500 metagenomes from this sample set through the Community Science Program, it was the largest … anything at the JGI. The Lake Mendota data set was run through the assembler MetaHipMer2. The computing program …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the … opened vast windows into specific activities catalyzed by microbial communities. By pairing RNA or DNA sequencing with … SIP experiments. “I’m looking forward to seeing that come through, predicated on these data standardization efforts — …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… general, work. KAROLINA:  We all know plants take up water through their roots. But for them to be able to pull that water through the whole plant system, they need to open these pores in their leaves called stomata. And through those pores, water is moved into the atmosphere …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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Rex Malmstrom
… Massachusetts Institute of Technology he developed a high throughput approach for isolating individual bacterial cells … that reveals in situ functional activities of specific microbial groups within complex communities.  The Microscale … to minimize molecular biology reactions, increase throughput, and enable processing of samples that would not …
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The IMG/M data management and analysis system v.7: content updates and new features.
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Label-free structural imaging of plant roots and microbes using third-harmonic generation microscopy
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JGI@25: Fueling Investigation into Methane-Making Microbes
… the world to map out genomes of rumen microbes. In 2018, through a JGI Community Science Program proposal that … aim is identifying chemical compounds that could inhibit microbial methane production. Another effort is in using microbial understanding to formulate a vaccine for …
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Team Science Reveals Important Protein in Poplar
… Science, Office of Biological and Environmental Research, through contract DE-AC02-05CH11231 between Lawrence Berkeley … National Institute of General Medical Sciences (NIGMS) through a P30 Grant (P30GM133893), and by the DOE Office of …
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