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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in … plants, is a comparatively understudied area of forest ecosystems as past studies have mainly focused on … with her JGI mentor, Robert Bowers . She contributed to the analysis of mobile genetic elements across all of the …
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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Work With the JGI! Tips for a Winning CSP Proposal
… The JGI’s Community Science Program gives researchers access to all kinds of sequencing, ‘omics … career stage, anywhere in the world, for free. We accept new projects related to energy and the environment several …
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Improving the Cacao Genome and Phytozome
… (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The global chocolate brands couldn’t … by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the … was developing a high quality node for cacao used for systemic orthology to enable use for both cacao functional …
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Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance
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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of … Energy under contract no. DE-AC02-05CH11231. The Georgia Advanced Computing Resource Center (GACRC) and Georgia …
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The Mobilome in the Mire
…   For years, researchers have known that many datasets miss a key part of microbial genomes: the mobile … move between organisms. But now, deep sequencing and new analysis methods are bringing this mobilome into light, and …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our … & Environment Meeting: “What we wanted to do was apply a systems biology approach to the oil spill, looking at …
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Genomic analysis of 94 SEMIA strains isolated from common bean nodules: species diversity and genes related to nodulation, nitrogen fixation, and tryptophan metabolism
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