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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria … effects of climate change. The team’s study used samples from the area immediately surrounding AMF’s long filaments, … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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Uri Neri
Uri Neri is a computational biologist who spends his days wrangling … and occasionally remembering to document his code. At JGI, he develops tools for viral discovery and analysis, …
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The Power of One, Amplified
… single cell genomics by collecting nearly 500 single cells from a single low diversity hot spring sediment sample. … of single cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Tracking the Origins of Methane-Producing Microbes
Approach Helps Identify Novel Archaeal Methane Metabolism. Methane-producing archaea are estimated to produce 500 … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong … California (UC), Merced assistant professor Suzanne Sindi from the School of Natural Sciences and started a program …
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Computationally Classifying Fungal Lifestyles
… class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of  Dothideomycetes fungi. The  work appeared in the June issue of  Studies in Mycology . This work was enabled in …
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Expanding Virophage Diversity
… maturation. Recently reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the … including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” (based on …
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Alabama A&M Interns Access An Abundance of Knowledge
… an internship program to bring students to the JGI for research training experience. Enabled by the DOE … and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant microbiome. They … The best part about interning here is the community aspect. Everyone here has also been so very nice and willing to lend …
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Cracking the Secrets of the Diatom’s Shell
Biofuels and bioproducts are a way to kick our addiction to fossil fuels. In this episode, we peek into how scientists Aindrila … research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy …
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Extracting the Secrets of Secondary Metabolites
CRAGE-CRISPR combo helps further demystify biosynthetic gene … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … CRAGE allows for the transplanting of these BGCs from one organism into an alternate host via a landing pad …
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Better Living Through Bioenergy
Biofuels and bioproducts are a way to kick our addiction to fossil fuels. In this episode, we peek into how scientists Aindrila … research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and Uwe Ohler … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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