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Expanding Virophage Diversity
… DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which …
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The Mobilome in the Mire
… researchers have known that many datasets miss a key part of microbial genomes: the mobile genetic elements, or MGEs, … bringing this mobilome into light, and opening up new options for engineering these microbes in the future. Join Sarah …
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Metabolomics
… JGI by identifying the actual molecules present in an environment that influence system behavior.  Through this … functional genome annotation, improves understanding of the role small molecules play in diverse biological … sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform …
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Biodesign
… Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by synthesizing genes, … automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign platform enables … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, …
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MGM Workshop at Fisabio Summer School 2026
… Register here for the workshop The MGM Workshop is Module 4 of the Fisabio Summer School.  The workshop is addressed to students and professionals of biology, biomedical research, the health sciences … will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by …
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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these animals … produces an atmosphere-warming gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea … 2010, the JGI has supported researchers studying those microbial methane-makers. Eventually, that could help us …
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the … fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by … that led to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples …
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Leo Baumgart
… his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the Sequencing Technology Implementation Lead, he directs a multidisciplinary team responsible for … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, …
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JGI announces 2024 New Investigator portfolio
… is eager to work and share our tools with a widening circle of researchers. That’s why each year we look for novel research projects — aligned with DOE missions and from PIs who have not led any previously-accepted … of desert grasslands to the metabolic savviness of microbial ecosystems at the forest floor and along ocean …
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Len Pennacchio
… joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio received his Ph.D in … Len Pennacchio is the JGI's Deputy of Genomic Technologies. oClick to learn more about the …
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JGI-KBase Panel at SACNAS
… Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a … students (and their mentors) how to begin establishing a professional presence through getting credit for any …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome …
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