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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The … on every continent besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from … DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of Energy award 0000238431 to D.H., the GENOBIOREF …
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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new ecological habitat. The Science By comparing genetic information from similar organisms, researchers have gained insights on why the dry rot ( Serpula lacrymans ) … Research Council, the Swedish Agricultural Sciences and FORMAS, and the UK Natural Environment Research Council. The …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … of human chromosome 19 The DNA sequence and comparative analysis of human chromosome 5 The sequence and analysis of …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. … on cone snails, C. californicus in particular, as a model system for venom-microbe interactions. Cone snail venom has … today. I didn’t know anything about Principal Component Analysis (PCAs) when I first started, and overall found …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. The Science … of microbial genomes directly from environmental sequence data, by piecing each genome together from large mixtures of … represented by enough single cell genomes to facilitate an analysis of within and between population heterogeneity by …
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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical … is one of the largest producers of environmental genomics data and has a strong reputation in the community,” said JGI … sure our computational workload can leverage future HPC systems – our data and compute challenges aren’t getting any …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… [Pictured from left to right are: [Above] Sara Branco, Asdrubal Burgos, … through genomic discovery across diverse organisms and ecosystems. Scientists are engineering next-generation … (NEON) in collaboration with the National Microbiome Data Collaborative (NMDC) to produce open metagenomics data. …
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The minimum information about a genome sequence (MIGS) specification
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The meeting was a hybrid event, with guests joining onsite at the Integrative Genomics … Her lab has leveraged bioinformatics in computational analysis to identify and characterize TEs, developing …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … months, the students participated in networking workshops, data carpentry hackathons, and also made new friends while … Project: “ Development of a multiplex genomic integration system for the selection of genes essential for specialized …
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JGI User Executive Committee Expands
… Six new members have been elected to the User Executive Committee … or improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and used by …
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive Committee of the Joint Genome Institute, a Department of … advanced genomic capabilities, large-scale AI-ready data and expertise to the global research community to study complex biological and environmental systems. The foundational studies enabled contribute to the …
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