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Effects of Polar Light Cycle on Microbial Food Web
… Preliminary observations regarding the contributions of algae and viruses to the ecosystem were noted, but require …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … diversity. The article adds to the compendium generated as part of Genomic Encyclopedia of Bacteria and … of these bacterial and archaeal genome sequences have been generated using techniques that the JGI has pioneered, …
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Len Pennacchio
… Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a rare form of human epilepsy and subsequently generated one of the first mouse models for this common … JGI’s primary point of contact for all High-Throughput Data Generation Platforms (Sequencing, Single Cell, Biodesign, …
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10 From JGI on the 2019 Highly Cited Researchers List
… Genomics Lead Dan Rokhsar , Molecular Biology & Genetics Staff Data Scientist Asaf Salamov, Plant & Animal … Plant & Animal Science and Molecular Biology & Genetics categories Microbial Systems research group lead … the team established community gardens of switchgrass plants in 10 different field sites on a north-south gradient …
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An Earth Month Look at Sustainability Efforts at the JGI
… Garden Club In her work at Berkeley Lab, Doina Ciobanu generally works at a single-cell level as part of the JGI … they’re repurposing abandoned planters, planting donated plants and swapping tips on growing greenery. With … mind, they’re focused on easy-to-maintain, drought tolerant plants that can also provide shelter to pollinators like …
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VEGA Symposium
… here  Registration fees:  Early Bird rates available now General & Berkeley Lab Attendee – $250 Student – $200 Regular Rates (begin September 19, 2026) General & Berkeley Lab Attendee – $300 Students & Postdocs – … in natural ecosystems, and functionally explore viral genetic diversity toward innovative biotechnological and …
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Partnerships: Myco-Ed
… species.  Students collect fungi, sterilize tissue, isolate genes and more. The metadata then goes into iNaturalist. …
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A Community Resource for Secondary Metabolite Researchers
… secondary metabolites are produced by groups of genes known as biosynthetic gene clusters (BGCs.) As reported in the recent Database … system known as IMG-ABC. That portal contained biosynthetic gene clusters and secondary metabolites information from …
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Mining Metagenomes for Cas Proteins
… The ability to accurately edit genomes (that is, repair gene mutations, and either delete or add genes in a precise fashion) has applications across many areas. In particular, gene editing is being used to develop drought, flooding, …
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Biodesign
… into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, … JGI Biodesign platform enables users to validate hypotheses generated from mining genomic data by designing and …
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The Power of One, Amplified
… that species specific sets of single cells harbored mobile genetic elements that were missed within paired metagenome … of within species recombination, indicating variation in gene flow between the analyzed community members. The Impact … profiles. This is akin to the structure of social media networks where one social media group may have a relatively …
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Tracking the Origins of Methane-Producing Microbes
… methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … and, acetoclastic. All three pathways require the gene cluster for methane production known as Mcr. Until recently, the Mcr gene cluster was found only in the archaeal lineage …
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