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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… sample, or a rumen sample, you’re going to find beautiful diversity.”  Within that diversity of bacteria and fungi, O’Malley and her team are …
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Gut Fungi: Unexpected Source of Novel Chemicals
… complex compounds called natural products . Yet, combing through the genomes of four anaerobic fungal species has … fungi synthesize molecules that are sources of new chemical diversity; the team identified what looked to be three …
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SIPs with Standards
Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which … reusable, and more insightful, for the future of studying microbial communities.   …
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JGIota: Sequencing Shiitakes with David Hibbett
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Access to Rock Star Scientists
Through the JGI-UC Merced Genomics Internship, graduate … JGI Mentors : Ben Cole & Axel Visel, Genomics of Plant-Microbial Interactions “The summer internship has further …     Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and …
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Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca
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JGI Announces 2023 Community Science Program Awardees
… “The proposed research by these PIs will address a broad diversity of important scientific questions relevant to the …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
Lab) and the Laboratory for Research in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of … was to realize that these genome copies that are spread throughout the whole cell are actually contained within a … in coastal sediments,” said Woyke, who also heads the JGI’s Microbial Program and is one of the article’s senior …
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Forming Scientific Connections and Building Community
… undergraduates and seven graduate students from UC Merced through their long standing internship program. In just two … W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein Bendall : “It’s great … of their work at the recent JGI Annual Meeting. Through the DOE RENEW initiative, three of the interns – …
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Honey Bee Gut Microbiota Divvy Up Dinner
But scientists have wondered exactly how the microbial community carries out its helpful metabolism: … is a kind of movable feast being deconstructed as it goes through the honey bee gut. Early on, monosaccharide sugars … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Accelerating Metagenomics Discoveries with Deep Learning
… deep learning, a branch of machine learning, data is passed through algorithms organized into multiple interconnected … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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