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Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032
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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)
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Alabama Agricultural & Mechanical University Internship Program
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Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… to a type of archaea called  Euryarchaeota . These ancient, single-celled organisms thrive in most  environments devoid … scientists have shown at least two microorganisms from different phyla are capable of methanogenesis. Using … methane,” Hatzenpicher continued. “These [newly discovered cells] have very simple pathways. There are different ways …
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Benjamin Cole
… In addition, Dr. Cole is focusing on how individual plant cells respond to their biotic environment using emerging single-cell characterization technologies (scRNA-seq, … Selected Publications …
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Webinar: SIP technologies at EMSL and JGI
… Mass Spectrometry, NanoSIMS, and other techniques. Q&A from the Webinar: 1. Q(uestion): How much DNA is required … but this is on the roadmap and will be piloted in the near future. 5. Q: How well-suited is the LA-IRMS for … you resolve root respiration/soil respiration vs plant CO2 uptake? A:  We’ve accomplished this so far by physically …
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A User-Centered Approach to Accessing JGI Data
… currently limited to: Public data: datasets associated with completed projects that are eligible for public release, have completed their embargos, and numerous other requirements. … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… more than 10 papers, including two Nature Plants publications, in five years, have come out of the … is famous for its work sequencing human and environmental genomes. But we now have these DNA synthesis capabilities … fostering academia-industry collaborations.” A third story from the issue — Machine learning-based prediction of …
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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization
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Genome-informed Bradyrhizobium taxonomy: where to from here?
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