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Insights into the phylogeny and coding potential of microbial dark matter
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Development of a thermophilic coculture for corn fiber conversion to ethanol
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Extracting the Secrets of Secondary Metabolites
… for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … because it allows researchers to delete or activate certain genes and assess how these edits affect functionality.  … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help … host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … genomes on the JGI data portal MycoCosm . They looked for genes known to be involved in fungal-host interactions and …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … these sequences may be tainted by the presence of non-viral genes. Up to this point, there has been a lack of fast and …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … Think of verbs and nouns as the nucleotide bases of DNA; genes analogous to paragraphs;  genomes equate to complete …
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CSP Functional Genomics
… Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic information into biological function.  The emphasis is on … Biodesign and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily …
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CoverM: Read alignment statistics for metagenomics.
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JGI Announces 2023 Community Science Program Awardees
… Congratulations to the proposers of the 19 proposals selected for the 2023 Community Science … Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … This year’s annual CSP call had five areas of emphasis: genes to function, plant and algal functional genomics, …
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DOE JGI Interns Share Their Summer Experiences
… This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching … hosted this summer were: Rida Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who …
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A Taxonomy of Bacterial Microcompartment Loci Constructed by a Novel Scoring Method
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