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The JGI Data Portal: Improving User Experience
… JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal … are more broadly applicable to the download processes from the other JGI Portals, as well. “For thousands of … enabling them to conduct more complex types of research without requiring them to build their own tools to do so.” The …
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How Filamentous Fungi Sense Food
… break down the components of plant cell walls, which range from simple to complex carbohydrates, and then convert them … degrade the plant biomass. In order to learn more about these regulatory networks in the model fungus  N. crassa … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently published …
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Webinars on Offerings & Capabilities
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Tanja Woyke
… a Research Scientist position in 2007, she switched gears from metagenomics to single-cell genomics, which is now her … well as our Deputy of User Programs. Click to learn more about the program's areas of focus, major initiatives and … al. 2011. Metagenomic discovery of biomass-degrading genes from cow rumen. Science 331, 463-467. Swan et al. 2011. …
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Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism
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Spatially structured bacterial interactions alter algal carbon flow to bacteria
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Biomass‐degrading enzymes are catabolite repressed in anaerobic gut fungi
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The Impact of Genome Analyses on Our Understanding of Ammonia-Oxidizing Bacteria*
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Anaerobic gut fungi are an untapped reservoir of natural products
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Microbiome Data Science: Understanding Our Microbial Planet
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Enzymatic carbon–fluorine bond cleavage by human gut microbes
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… which microbes are present in a sample, to generate data about which organisms are active, and which microbes are … by weeks of tricky, laborious lab work to analyze samples from one experiment. Starting a  few years ago, researchers … multiplies these possibilities, and maximizes returns from the demanding nature of SIP experiments.  Especially as …
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