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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. … are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. … even animal and human (for the first time) gut and taxonomically classified into 27 distinct clades (17 of them without …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As … a special kind of plant metabolism. This metabolism, called crassulacean acid metabolism, or CAM — that’s C-A-M, … plant system, they need to open these pores in their leaves called stomata. And through those pores, water is moved into …
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JGI@25: From Life at the Extremes to Editing Genomes
… 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … interest. As Doudna noted in her book, “These bits of information sent a little shiver of intrigue down my spine; … doi: 10.1016/j.molcel.2018.12.015. Harrington LB et al. Programmed DNA destruction by miniature CRISPR-Cas14 …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will … completing the human genome, the JGI became a national user facility. The staff and resources shifted to offering …
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An Automated Tool for Assessing Virus Data Quality
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … (Berkeley Lab), has developed a command-line tool called CheckV that can automatically do both. The work was … and guidelines for providing the minimum amount of information for an uncultivated virus genome. CheckV has …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also … the set of chromosomes from each ancestor is called a subgenome. Session and Rokhsar, building on work … evolutionary history of strawberry in such detail is biologically interesting,” Session said.  The Kmer Subgenome …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean production in 2017-2018  was … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As … JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on a changing planet. … that’s just a little west of Fort Collins, near a city called Leadville. ED:   And, uh, Leadville is interesting. …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On … effect in six San Francisco Bay Area counties. The JGI, located at Lawrence Berkeley National Laboratory, is located in … statewide. In this brief captioned video, JGI Chief Informatics Officer Kjiersten Fagnan reflects on the …
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Danielle Goudeau
… Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, and 16S sequencing. She also develops …
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A Mentor’s Perspective on Training the Next Generation
… or another, they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an experienced career scientist as a …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions … how researchers are utilizing deep learning to automatically generate insights from metagenomic data. In deep … (CRD), in order to create more useful tools for the bioinformatics community. Other work presented at the workshop …
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