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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a … return to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By … helped fungi, bacteria and viruses survive. With this metagenomic analysis, it was possible to identify specific …
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MycoCosm Tutorial
… equipped with interactive web-based tools for comparative genomics and community annotation. Presented by Igor …
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JGIota: Looking Back at Methane-Making Microbes
… 2010, the JGI has supported researchers studying those microbial methane-makers. Eventually, that could help us …
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The Busy World of Deep Sea Eruptions
… underwater volcanoes and hydrothermal vents — where lively microbial communities thrive, and even support entire …
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UC Merced Interns Reflect on Their JGI Summer Projects
… skills as well as build their network in the field of genomics and scientific research. The topics students worked … the goal of inspiring students to embark on a career in genomics, and to help foster a diverse future workforce in science. Since the program’s inception, more than 30 students have contributed to the research of JGI …
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A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization
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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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From Textbook to Real World Applications
… biology, Robert Evans and Jan-Fang Cheng in the Functional Genomics group took it upon themselves to mentor them. …
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Extracting the Secrets of Secondary Metabolites
… further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not … that produce them. The Impact Secondary metabolites are microbial compounds produced in response to hardship or … (Berkeley Lab) can then employ CRISPR in a variety of microbial hosts. Summary Photorhabdus luminescens proves …
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Dispatches From JGI Interns
… interns from the 2021 cohort describe their deep dives into genomics, computational tools, and big data.  …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… microbiomes. Scientists conducted a shotgun metagenomic survey on three types of conifers–limber pine, … do on the leaf surface. More specifically, they found that microbial community composition and functional potential … project in the JGI-UC Merced Internship Program. In 2023, Shayna Bennett, a UC Merced graduate student in Carolin …
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