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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … Microbiology has developed, tested and deployed a pipeline to first target cells from communities of uncultivated … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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JGI Advisory Committee
… The JGI Advisory Committee (JAC) is convened by the JGI Director to provide guidance on the Institute’s strategic, … JGI advisory and executive committees, such as the User Executive Committee, the DNA Synthesis Science User Advisory Committee, the Fungal and Algal Program User …
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University of California, Merced Internship Program
… at the JGI, the Genomics Internship Program soon expanded to include undergraduate students. To date, more than 90 UC Merced students have contributed to the research of numerous JGI scientists. Interns say their experiences …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen … those genomes, is rising. The purpose of this Workshop is to illustrate the expansion of this field and bring it to … with the JGI Community Science Program and how you can use the KBase system to accelerate your plant genomics …
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2023 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in professional development enrichment activities. For some …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … walls, while brown rot cannot break down the lignin but use cellulose. Finally, there are soil saprotrophs, which … generated by the JGI more than a decade ago. Having these datasets will assist researchers in moving toward functional …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two …
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Dispatches From JGI Interns
… Program invites undergraduate and graduate students to engage in real, impactful research projects with JGI mentors. In this episode, hear two interns from the 2021 cohort … deep dives into genomics, computational tools, and big data.  …
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MicroSyn: A user friendly tool for detection of microsynteny in a gene family
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference genome is cited … C. zofingiensis on Phytozome … Algal Datasets … Plant Datasets …
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