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The More the Merrier: Making the Case for Plant Pan-genomes
… short life cycles and can be easily transformed, traits that make them easy to work with bioinformatically and in … larger than any individual genome highlighting the fact that the genetic information in a single reference genome is … pan-genomic context so we don’t overestimate the evolution that happened after polyploidization,” said John Vogel, head …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler … Lab is home to two supercomputers — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the … Computing (NERSC) has another supercomputer, Perlmutter that works at large scale. But nearby the JGI, a cluster …
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JGI announces first round of 2023 New Investigator awardees
… and share our tools with a widening circle of researchers. That’s why twice each year we look for novel research … high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these …
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SIPs with Standards
… researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This …
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Steven Wilson
… is responsible for developing and supporting applications that span the lifecycle of activities at JGI - proposal … and automation of microbial/metagenomic assemblies, portals that make data available to the public, and our … worked with the Informatics Department to develop software that pushed instrument run information directly into the …
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JGI announces second round of 2023 New Investigator awardees
… and share our tools with a widening circle of researchers. That’s why twice each year we look for novel research …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… program at:  jgi.doe.gov/user-programs . Q:  How can I get that NEON Biorepository Letter of Support ahead of filing a … doesn’t have enough samples or the type of samples that I need? A: Make a request through the NEON assignable … well? A:  Currently NEON doesn’t have a method for hosting that data. NEON recommends you host your data elsewhere. …
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JGI Welcomes New UEC Members
… providing input and advice on JGI policies and practices that affect users and their access to technical capabilities …
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JGI announces 2024 New Investigator portfolio
… and share our tools with a widening circle of researchers. That’s why each year we look for novel research projects — …
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You Can Move, But You Can’t Hide
… Science Mobile genetic elements (MGEs) are genetic entities that seek to replicate themselves and spread from cell to … ecosystems, researchers must examine the interactions that happen between tiny organisms (microbes) located in … geNomad is an annotation and classification framework that combines and builds on two standard techniques for …
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Accelerating Metagenomics Discoveries with Deep Learning
… He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s … high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… started, and overall found informatics to be intimidating. That first exposure from great interactions with Dr. Ben … be at this stage without the internship and mentorship that followed. I especially want to emphasize the inclusive, …
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