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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … of guide RNAs that were effective against 94 percent of the genes in a lipid-prolific yeast. The Impact The team used …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … came up with this new method, Session mentioned that the analysis for determining the evolutionary history of … you evolved from’,” he said. “This approach could work if genes from all possible candidate ancestors are available. …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … bacteria, archaea and fungi. We thought this kind of analysis would provide a framework for the evolution of this … This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified across different …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … spectrometry workflows for polar and nonpolar metabolite analysis, creation of large metabolite databases by running …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … genome, and these gardens allow researchers to test what genes affect the plant’s adaptability to various … a combination of really cutting-edge genomics and genetic analysis with large scale data collection,” he added. Jeremy …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … — cupids of the plant world facilitating the remixing of genes in the next generation of flowering vegetation. In … that interested the authors was that an evolutionary analysis of  Bifidobacterium strains in honey bees and …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how … to white rot fungi. Additionally, some of the saprotrophic genes found in the mycorrhizal species, such as nutrient …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances … Myburg, Wegrzyn, Borevitz) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in … P. Sloan Foundation Grant 2013-10-27 (to the University of California, Berkeley [N.V.]); L’Ecole Normale …
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