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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days
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Ancient Algae Reveal Secrets of Plant Evolution
… further drive a strong bioeconomy. Summary Through the Community Science Program of the U.S. Department of Energy … plants to transition to terrestrial life.  These led to highly detailed assemblies for three strains of  Zygnema … of Northern Illinois University, the Joint Genome Institute Community Science Program (CSP), the United States …
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Soil virus offers insight into maintaining microorganisms
… to another, which can have a significant impact on the microbial communities within soil. Using metagenomics, … through genetic drift and diversification processes. The high-resolution structure of chitosanase was obtained at SLAC by …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… rumen: Livestock live off plant matter, and their rumen are highly capable of breaking down potential biomass sources in … map out genomes of rumen microbes. In 2018, through a JGI Community Science Program proposal that started six years … aim is identifying chemical compounds that could inhibit microbial methane production. Another effort is in using …
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Linking microbial Sphagnum degradation and acetate mineralization in acidic peat bogs: from global insights to a genome-centric case study
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The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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Making a Lichen Together
… could help inform efforts at bioengineering symbiotic microbial consortia for bioenergy crops. And because lichens … are dominant carbon and nitrogen fixers in alpine and high latitude ecosystems, deciphering their internal …
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Enlarging Windows into Understanding Gene Functions
… approaches of Biotin DAP-seq and multiDAP allows for ultra high throughput discovery of transcription factor binding … User science we have implemented these two new methods as a high-throughput JGI capability supported by liquid-handling … Center in Hungary. His approved proposal through the JGI’s Community Science Program (CSP) focuses on a fungal …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… Primary Template-Directed Amplification (PTA) yields a much higher completion, above 80% in most cases. The Impact PTA … that is desirable in the microbiome field due to its high recovery of single-cell genomes. This is key to better … other mobile elements. Moreover, the MAGs are composites of high similar genomes, and no cell in the microbiome exactly …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The Science Most species … to produce a monoploid reference sequence. For the highly polyploid sugarcane, an international team of … polyploid sugarcane genome now underway as part of the JGI Community Science Program (CSP), a critical factor in …
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Virus-Microbe Interactions of Mud Island Mangroves
… user facilities. Baker had worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s … Rambo’s work was overseen by Susannah Tringe, head of the Microbial Systems group. He also worked with Simon Roux and …
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