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Data Ecosystem
… cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development …
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Metagenomic Sequencing of Two Salton Sea Microbiomes
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Complete Genome Sequences of Two Phylogenetically Distinct Nitrospina Strains Isolated from the Atlantic and Pacific Oceans
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI … for which quality DNA has been provided by the team. These strains have been characterized physiologically and …
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Plant Program
… to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …
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Comparative genomics of two ‘Candidatus Accumulibacter’ clades performing biological phosphorus removal
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of first, including the flagship internship program between … and the Joint Genome Institute. AAMU students spent two months in Berkeley, California honing their scientific skills and collaborating with …
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JGI Advisory Committees Code of Conduct
Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to … on sustaining our record of excellence and respect, and for principles of integrity, safety and reliability. As …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We …
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Genome Sequences of Two Klebsiella pneumoniae Isolates from Different Geographical Regions, Argentina (Strain JHCK1) and the United States (Strain VA360)
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Accelerating Metagenomics Discoveries with Deep Learning
… of these algorithms, inspired by communication networks found in nature, allows machines to “learn” features. … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … Deep learning algorithms can vectorize faces… … so, why not proteins?         … The U.S. Department of Energy …
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Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting
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