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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and … (polyploidy) and insights into the dynamics of gene expression as it grows back vigorously year after year … history and perennial lifecycle makes it important to study directly. The large and complex genome of M. sinensis …
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A phylogenetically novel cyanobacterium most closely related to Gloeobacter
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Mapping the Earth’s Hidden Fungal Kingdom
… massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over the past … about 200,000 fungal species have been named. Among those sequenced, roughly half of all genes have completely unknown … allows for revealing patterns that would be invisible when studying species in isolation. The comparative power has …
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Game On: High School Students Drive Everglades Metagenomics Study
… sampling in the Florida Everglades to help train the next generation of scientists. She shares her thoughts about the … do an environmental microbial community (metagenomic) soil study in an untouched region of the Everglades, the … samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed the soil samples, the JGI offered 7 …
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat … finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint … Swift — verified that the fungi expressed biosynthetic gene clusters, which are “building blocks” of natural …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… Streptomyces are nature's chemical factories. They hold genetic blueprints for dozens of complex compounds, but stay … bacterium's entire metabolism for chemical production, the study provides a blueprint that engineers can use to design … The team also identified previously unknown promoter sequences within these gene clusters, offering new …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … at Lawrence Berkeley National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help … plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act as … from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the …
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Development and Assessment of SNP Genotyping Arrays for Citrus and Its Close Relatives
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Synthetic Biology Lab
… The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic … We focus our efforts on integrating database mining and sequence design with scaling the production of large, … We also develop methods for efficient QA/QC based on next-generation sequencing technologies including PacBio and …
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The Fungi That Survive In Antarctica
… Black fungi are microscopic and mighty. They survive everywhere … of Tuscia researchers Laura Selbmann and Claudia Coleine are working with scientists from around the world – and the JGI – to …
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The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi
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