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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … have uncovered a diversity of viruses that infect not just crops, animals and humans, but also microbes whose presence … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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Uncovering Novel Genomes from Earth’s Microbiomes
… under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and … Biotechnology . Known as the GEM (Genomes from Earth’s Microbiomes) catalog, this work results from a collaboration … of metagenome-assembled genomes (MAGs) directly from sequenced environmental samples without needing to cultivate …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the journal  Environmental Microbiome . “Before JGI was involved, I was not sure we … sent through JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) system, reached  Emiley Eloe-Fadrosh , …
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Metagenomic Sequencing of Two Salton Sea Microbiomes
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for … of the virus and plasmid workflows for the National Microbiome Data Collaborative.  This award recognizes … Prize also recognizes innovative and impactful analysis of microbiome data that has changed our understanding of the …
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Frequently Asked Questions: Proposal Submission
… The deliverables can range from raw sequence data to well-annotated assembled genomes to … listing of approved proposals can be found here. All sequence data will be accessible on the JGI Data Portal. … How much will it cost me to sequence or synthesize my target or obtain metabolomics data? …
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Team Science Reveals Important Protein in Poplar
… experiments showcase potential for engineering bioenergy crops The Science Scientists at Brookhaven National … traits that make them more appealing bioenergy feedstock crops. The trees can be bred to be more resistant to … In the 1970s, the DOE  targeted poplar as its primary wood crop for bioenergy feedstock development due to its ability …
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Roadmap for Accelerated Domestication of an Emerging Perennial Grain Crop
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Functional Diversity of Diterpene Synthases in the Biofuel Crop Switchgrass
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Genome biology of the paleotetraploid perennial biomass crop Miscanthus
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JGI@25: Strengthening Soybean
… it pair with maize, the dominant source of bioethanol, in crop rotation, but soybean ( Glycine max ) also has the … impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both …
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Fungal & Algal Program
… The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and … resource hub that provides access to publicly available sequenced algal genomes and genome annotations generated by …
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