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The Sequence to Function: Applications and Analysis for the …

… in doing so enabled the JGI to be the first to publish the sequence analysis of the target chromosomes 5, 16, and 19, … basis of their behavior in the environment.  The JGI genome sequences and metabolomes of microbes and microbial …

… impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both … of seed oils as biofuel. After analyzing the original sequence, Gary Stacey of the University of Missouri said he …

… of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … ecotypes because, historically, they have used the sequence of a “marker gene,” namely the 16S ribosomal RNA … bioinformatics tools designed for analysis of DNA and RNA sequence data.  … Datasets … BBTools …

… of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s using is … Deep learning algorithms can vectorize faces… … so, why not proteins?         … The U.S. Department of Energy …

… among the authors who offer perspectives on what the next five years of innovation could look like. In one article, … recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. A second approach … genomes directly from the environment and focuses on sequence reads to link mobile elements such as plasmids to …

Every year, the JGI sequences around 35,000 samples — from plants, algae, …

… to provide a cataloged and curated culture and genome sequence resource of rumen microorganisms . Thanks to the … in themselves. For example, a few organisms originally sequenced in the Hungate1000 collection harbor enzymes that … rumen microbes are awesome and this is just another example why.” …

Chen, ZJ et al. 2020. Genomic diversifications of five Gossypium allopolyploid species and their impact on … Bennetzen, JL & Schmutz, J et al. 2012. Reference genome sequence of the model plant Setaria. Nature Biotechnology … Nature 2010;463:763-8. Schmutz, J et al. 2010. Genome sequence of the palaeopolyploid soybean. Nature 4637278: …

… researchers studied microbial communities across five oceanic regions. In doing so, they found a high degree … University of Wisconsin-Madison collected 40 samples from five oceanic regions to better understand how these …