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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving … varieties for biomass production. He did his postdoctoral studies at the Carnegie Institution for Science where he …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … Crop breeders have harnessed polyploidy to increase fruit and flower size, and confer stress tolerance traits. … line is simply not true based on previous pan-genome studies. Thus, we must compare multiple polyploid genomes to …
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Soil Microbes Trade-Off Biogeochemical Cycling for Stress Tolerance Traits in Response to Year-Round Climate Change
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Offerings & Capabilities
… of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge capabilities to help advance their science by … and further advancing sequence applications, single cell genomics, DNA synthesis, and metabolomics.   … Deputy …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute … inconsistency makes interpretation and integration across studies difficult. Our Plant Gene Atlas resource addresses … time-consuming process. Successfully accomplishing this requires a diverse team of specialists, each contributing their …
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High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types
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Jeremy Schmutz
For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community … science for JGI Plant Flagship Genomes and DOE relevant cellulosic feedstocks. Schmutz provides scientific project … funded through the CSP program. In addition to continuing to develop strategies for plant genome sequencing, he …
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley … National Lab’s (Berkeley Lab’s) core values, which guide the relationships we nurture in our workplace and seek … technology (IT) activities and strategic plan. … The Plant Program Advisory Committee is chartered to offer …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, … ANI is used to ascertain the species specificity of single cells and genomes extracted from metagenomes, and also as a … the IMG/M data release policy and follow the metadata requirements for integrating data into IMG/M (see IMG/M …
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Genomic Changes Associated with the Evolutionary Transitions of Nostoc to a Plant Symbiont
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Natural Prodcast Episode 21: Elizabeth Parkinson
… with him, I was working on the natural product dioxin ubiquinone, which actually comes from a marine bacterium. And … So chemicals are their way of talking. You bring up an excellent point though, and I think this is an area that is a … were not enantio or diastereomeric pure. And so there were studies that were done previously with SVR. But because …
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Special Initiatives & Programs
… products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis requests, the … intended to accelerate basic research in the development of cellulosic ethanol and other biofuels, advancing the federal … located in geographically distinct areas and use different plants both for laboratory research and for improving …
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