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… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … biofuels and other bioproducts. Summary Researchers at the University of California, Davis and UC Santa Barbara … also used the tool to predict possible functions from 733 metagenome-assembled rumen genomes. Finally, they used the …

… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … in bacterial immunologist Joe Bondy-Denomy’s lab at the University of California, San Francisco. Both are co-authors …

Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … and fungi run the gamut from mutually beneficial to antagonistic. In fungi, 5mC is often found in transposable … Ecology & Evolution , a team led by Robert Schmitz at the University of Georgia and including JGI researchers …

Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … Through the JGI’s Community Science Program, Colorado State University researchers led a consortium to study river … National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols …

New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … lignin.  Researchers led by Michelle O’Malley’s lab at the University of California at Santa Barbara  recently … (GLBRC, https://www.glbrc.org/) contract DE-SC0018409 (University of Wisconsin and Michigan State University). The …

In honor of the JGI's 25th anniversary in 2022, we have revisited a … led by the JGI and Virginia Polytechnic Institute State University, was released to the public in a highly-cited … the SODmap Mobile app enabled SOD Blitz participants to geotag specimens they collect. Later, those are annotated with …

… genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … “Why bother keeping this?” For Stuart McDaniel’s lab at the University of Florida, an answer is in sight for a similar … DEB-1239992 to N.J.W.; the Emil Aaltonen Foundation and the University of Turku to S.O.; and NSF DEB1541506 to J.G.B. …

Planck Institute (MPI) for Terrestrial Microbiology and the University of Bordeaux have developed a platform that mimics … French Government ‘Investments for the Future’ Programme, University of Bordeaux Initiative of Excellence (IDEX …

A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … in France and Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … until Ronald D. Ower, a researcher from San Francisco State University, developed a technique to successfully obtain …

… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … a mixture of, for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. So …

Populations of Antarctic lake microbial communities change with the … were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  … The study was led by Rick Cavicchioli, professor at the University of New South Wales, Australia, and included …