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Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1
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10 From JGI on the 2019 Highly Cited Researchers List
… the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited Researchers , which includes 10 … Kerrie Barry and Jeremy Schmutz worked with a community of switchgrass researchers to conduct a large-scale field … to uncover the genetic basis of local adaptation in switchgrass. Reported in the Proceedings of the National …
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Viral Genomics Group
Genomics group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host prediction … phages.  Current Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions — how big …
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JGI Advisory Committees Code of Conduct
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Jane Grimwood Named HudsonAlpha Genomics Chair
Cited Researchers list assembly by Clarivate Analytics. In 2020, she was named a Yellowhammer Woman of Impact.     … announcing a high-quality reference sequence of the complex switchgrass genome , using samples from common gardens … network of common gardens and are exploring improvements to switchgrass through more targeted genome editing techniques. …
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JGI on the 2021 Highly Cited Researchers List
Congratulations to the 2021 Highly Cited Researchers at the JGI! They are among … research team that combined field data with a reference switchgrass genome to associate climate adaptations with switchgrass biology. The information could be useful toward …
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Single Cell Research Group
Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., …
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Exploring Phages at JGI
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … and archaeal cells — and detected the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the …
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Natural Prodcast Episode 3: The Primer, Part 3
… and listen to the first two parts ( part 1 is here and part 2 is here ) so you understand what’s happened so far in the … me to check her stat and she was absolutely correct. Since 2010 there have been eight new antibiotics added to the … from your cultures, but then you’re going to find another 20 or 30 secondary metabolism pathways that you didn’t even …
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, … such as terrestrial soil, having additional isolates and metagenomic datasets will strengthen future virus-host …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … of stable, synthetic microbial communities to take advantage of their joint metabolisms. Because, together, microbes …
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