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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the …
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2025 NeLLi Symposium
… to develop recommendations for cultivating new Bacteria and Archaea revealed by a recent genome census . Speakers John … Natarajan Google Olga Zhaxybayeva Dartmouth University … Metagenomic and single-cell sequence data have provided a … symposium series will provide an overview of the bacterial, archaeal and microeukaryote diversity cataloged and …
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Natural Prodcast Episode 5: Brad Moore
… marine natural product biosynthesis and at the beginning stages of connecting molecules and genes. And then genomics … would spend time between our two laboratories doing metagenomics, some genomics. We were a little concerned … end of last year. Dan: So these are going to be seaweed metagenomes? You’re sequencing everything? Brad: Metagenomes …
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JGIota: Looking Back at Methane-Making Microbes
… emissions mainly come from gut microbes — the bacteria and archaea breaking down plant matter. So since 2010, the JGI …
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Effects of Polar Light Cycle on Microbial Food Web
… and the nearby Southern Ocean shift from phototrophs to archaea when sunlight becomes scant, Ace Lake’s bacteria … is nonexistent, the bacteria are replaced by carbon-fixing archaea. Although Ace Lake was formed from the Southern … were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  …
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … multiple predictions to reliably match viruses with their archaea and bacteria hosts. The Impact Within the domains of … such as terrestrial soil, having additional isolates and metagenomic datasets will strengthen future virus-host …
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New Research Sheds Light on Diversity in the Deep Sea
… themselves or eliminate waste. The Impact The bacteria, archaea and other microorganisms of the microbial … 511 new or recently discovered genera of bacteria and archaea. Many of the samples shared a high prevalence of … at Lawrence Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome …
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Tapping the treasure trove of atypical phages
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the … multiple predictions to reliably match viruses with their archaea and bacteria hosts.  Jeremy Schmutz’s 2023 published … study that leveraged population genomics to investigate archaeal hitchhikers and found that, while they often act as …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… on all the kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of analysis would … located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT enzyme … of 15 species from each of six kingdoms: eubacteria, archaea, protist, plant, fungi and animal. This analysis led …
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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology 21, e3002083 Roux et al., …
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A Shrubbier Version of Rubber
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