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The fungus that made itself at home
… to thrive in manmade environments. As reported January 5, 2018 in The ISME Journal , a team led by University of … the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. …
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Single Cell Research Group
… Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial … Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential …
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Extracting the Secrets of Secondary Metabolites
… for a slew of vital products in biotechnology, medicine, agriculture, and other industries — yet there’s still so … are produced and how to leverage their powers in agriculture, pharmaceuticals, biofuels and beyond.  … User Facility, is supported under contract DE-AC02- 05CH11231. …
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Natural Prodcast Episode 3: The Primer, Part 3
… episode 3 of the Primer! — DAN: So, you know, in the in the 50s 60s 70s, most of the exploration of this is done by …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… to contact? A:  Contacts are listed on the proposal call page. Feel free to  reach out to any of them with questions. … range from traditional single cell sequencing and mini-metagenomics to more targeted approaches, such as BioOrthogonal Non-Canonical Amino acid Tagging (BONCAT). Q:  Do you offer scholarships and/or …
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the … such as terrestrial soil, having additional isolates and metagenomic datasets will strengthen future virus-host …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… the JGI’s Community Science Program , the team used metagenome assemblies, transcriptomes and single amplified … JGI’s help. Additionally, the Marsarchaeota comprise 20-50 percent of the iron-oxide microbial mat communities in … the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The work was supported by Pacific Northwest …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen … the role of viruses in many areas such as ecology, agriculture, and medicine. In the recently published … some of the current challenges faced by those using metagenomics to try to understand the far-reaching impacts of …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… from the University of California (UC), Berkeley, UC Agriculture and Natural Resources (ANR), US Department of Agriculture P­­lant Gene Expression Center, Pacific … by the Office of Science of the DOE Contract DE-AC02-05CH11231. D.P. is supported in part by the Berkeley …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… of stable, synthetic microbial communities to take advantage of their joint metabolisms. Because, together, microbes …
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Open Frameworks Training the Next Generation of Scientists
… Over the past two years, Myco-Ed has been used in 15 individual classrooms across the country, training 316 … biotechnology applications in a range of fields including agriculture, ecosystem health, and medicine optimization.  … in KBase (Module 4), and Conclusions and Publishing (Module 5) – that enables student-curated  FAIR (findable, …
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A Community Resource for Secondary Metabolite Researchers
… a variety of fields including biotechnology, medicine and agriculture. This comprehensive public repository of BGC … and secondary metabolites information from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed … Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently underway. …
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