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A blueprint for contemporary studies of microbiomes
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A compendium of geochemical information from the Saanich Inlet water column
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Data Policy
… are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a limited and time-sensitive protection of certain types of data to support their use by those … to as “data users”) cannot see this data. Use-Restriction : A period in which data is publicly visible and …
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Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9.
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have … materials, rumen microbes and their enzymes are an optimal study subject that could lead to more sustainable energy … for a hands-on undergraduate research course for all biotechnology majors at CSU-San Marcos. That course has since …
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How to Target a Microbial Needle within a Community Haystack
… make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by researchers at … allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their … detailed in the journal  Microbiome , combines multiple techniques and was demonstrated using a specific group of …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is … — worse, they didn’t even know how big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights … (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now …
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A compendium of multi-omic sequence information from the Saanich Inlet water column
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Prokaryotic responses to a warm temperature anomaly in northeast subarctic Pacific waters
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Mining Metagenomes for Cas Proteins
… to accurately edit genomes (that is, repair gene mutations, and either delete or add genes in a precise fashion) has applications across many areas. In particular, gene … author Lucas Harrington was a graduate student from study senior author Jennifer Doudna’s lab, and he worked …
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Partnerships: Adopt-A-Genome
… the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, … provided by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … culture. Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. … over 125,000 partial and complete viral genomes. That study multiplied the number of known viral genes by a factor …
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