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Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533T, a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to … with tracings of stable, heavy isotopes, SIP allows researchers to go beyond understanding which microbes are … we do this better? How do we improve data accuracy and make results from different SIP studies easier to compare?” said …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… National Laboratory (Berkeley Lab), the National Energy Research Scientific Computing Center (NERSC), the DOE Joint … and the ExaBiome team. “They produced fantastic scientific results this year by assembling a collection of large … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and is …
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From Competition to Cooperation
… The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had … the symbiotic lifestyle. The Impact The analysis enables researchers to understand how plants and fungi developed … feedstock crops, to acquire nutrients. Additionally, these results validate how mycorrhizal fungi play an integral role …
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Cataloging the Microbes that Manage the Health of River Systems
… watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled … the core microbes are and what they do—can help researchers develop predictive watershed scale models to … sequencing protocols so that researchers could compare results across the varying sampling locations. …
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Refining the Process of Identifying Algae Biotechnology Candidates
… As any good cook knows, recipes can be refined for best results, often by starting with identifying the right ingredients. Researchers collaborating across multiple institutions have … gasoline gallons if target yields could be achieved. Researchers at many national laboratories are working toward …
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Mapping Heat Resistance in Yeasts
… fungal genomes. The Science In a proof-of-concept study, researchers demonstrated that a new genetic mapping strategy … members of a given species. These approaches don’t allow researchers to compare across very distant species that no … as part of a 2014 Community Science Program project. The results revealed that at each of eight genes, having a …
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Picking Up Threads of Cotton Genomics
… cotton D genomes. A multi-institutional team including researchers at the U.S. Department of Energy (DOE) Joint … team that contributed to the multinational consortium of researchers that sequenced and assembled the simplest cotton … cottons, along with noted key fiber development genes. The results indicate remarkably high overall sequence similarity …
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Ancient Algae Reveal Secrets of Plant Evolution
… Research uncovers the genetic foundations that helped plants … May 2024 in  Nature Genetics by an international research consortium led by the University of Nebraska-Lincoln … plant-like cell walls and environmental response.  These results suggest that the evolution of complex bodies and the …
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Honey Bee Gut Microbiota Divvy Up Dinner
… what biochemical processes? Now, an international team of researchers has identified the major metabolic roles of … shared between honey bee and bumblebee gut microbiomes. Researchers found that pollen’s pectin and hemicellulose are … microbiome to harvest all the energy they can. The results in the study were enabled by a number of  in vitro …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… in New Mexico via leakage from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides … ethene. Applying genome sequencing and analysis, the researchers identified other bacteria and microbial processes that support PCE biodegradation. The results demonstrate that it takes a (microbial) community to …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… — has been developed to help inform scientists and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to correlate protein annotations … Selecting a protein identified from their studied system results in seeing their predicted functional and metabolic …
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