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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses … by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … this to untangle which microbes ate the compound and how much they ate.  These analyses provide granular insight into …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science … He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with me to … he thinks it could very well help us as the world becomes a much more crowded place. ED: I mean I really think we’re at …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in … Wildlife Preserve. They chose this location because much is unknown about the diversity of organisms (taxonomy) …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter scenes that came with crayons in various shades of white. To … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Plant Program
… user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in … A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to create renewable … understanding of plants’ biological and ecological roles to foster sustainable solutions for energy, agriculture and …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… Though visible to the naked eye, microscopy reveals unexpected complexity … At first glance, the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, … there is need to look at and study biological complexity in much more detail than what is being done currently. So …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Congratulations to the 2023 Highly Cited Researchers from the JGI recognized … Protein Families (NMPF) Catalog . Published in the October issue of Nature, the study highlights the vast … a Nature Plants study identifying colonization patterns in eelgrass . Igor Grigoriev’s recent work includes the …
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A More Intuitive Phytozome Interface
… plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the current, and … Phytozome, with a more intuitive interface, deployed on much more maintainable software and hardware infrastructure. … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… global diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s … of viruses in the same drop—the vast majority not harmful to humans could be even larger. Viruses infect bacteria, … everywhere, comparatively little is known about viruses, much less those considered large and giant. In a recent …
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Micro-Scale Applications Group
… approaches.  Our group also seeks out new approaches that utilize microfluidics/microdroplet technology in order to enhance the quality of single-cell genomes and directly … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes …
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A Sorghum Pangenome Opens More Doors to Discovery
… sorghum varieties, a resource for breeders and researchers to harness the traits that let this biomass powerhouse … for Biotechnology Genome Sequencing Center and a member of the JGI Plant Program. Lovell was a senior author on … A.M., Healey, A.L.  et al. A sorghum pangenome reference improves global crop trait discovery.  Nature (2026). …
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Boosting Small Molecule Production in Super “Soup”
… environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to … Austin and Michael Jewett of Northwestern University describe a two-pronged approach that starts with engineered yeast cells but then moves out …
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