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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… users with various outputs free of charge, including data such as fully annotated genome assemblies or … that the resulting work will be published. JGI data is subject to a brief embargo period, after which it … We recommend using a full-service courier (more information and some …
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Disclaimer
… system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring of this use by …
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Prokaryote Program User Advisory Committee
… management and strategic objectives of the microbial and metagenome programs and report back to them. The Committee …
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Team Science Reveals Important Protein in Poplar
… National Laboratory (BNL) led a team that  identified a protein , PtrbHLH011, within poplar involved in plant … New Investigator program , BNL scientists focused on the protein PtrbHLH011   that appeared to be involved in   iron … were conducted to study iron accumulation and cell wall structure in the poplar plants with help from scientists at …
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Webinar: MycoCosm Tutorial
… While are still working on finalizing the tree and related publication the tree is still in development and not … 10.  Q: Is there any possibility to search for genes/proteins by their commonly used names in publications? e.g. … of the portal. 14.  Q: Has there been any interest in using JBrowse / JB2  for genomic views ( e.g.,: …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … host organism. With the virus-host boundary clearly defined using functional annotation methods, it was possible to …
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Natural Prodcast Episode 19: Bill Fenical
… everybody else started looking at things and doing chemical structures, learning a little bit about things. And that was … molecules that bound inside the cells to tubulin, these proteins that allow the cells to divide. We found all sorts … we have to devise our own culture media. So we started using a whole bunch of polysaccharides. We cultured things …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… — the DNA found inside mitochondria, the energy-producing structures within cells. This is the largest dataset of its … set, the same 15 core genes — 14 encoding energy-production proteins plus one ribosomal protein gene — were present in … team then extended their analysis beyond the reference set, using two additional approaches. To search environmental …
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Natural Prodcast Episode 20: Brian Bachmann
… screening methods, genome mining in cave microbiomes, and using engineered biosynthetic pathways and enzyme systems to … to offer because they’re unique environments. These are structures that are millions of years old. This is — rooms … or you could look at metabolism markers like phosphoprotein S6. So if there is a perturbagen present– DAN …
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The JGI Data Portal: Improving User Experience
… technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only accessible via Phytozome, the … resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief …
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Metabolomics
… profiles from diverse biological and environmental samples using advanced liquid chromatography mass spectrometry … soil, lake).  A wide range of metabolites are identified using LC-MS/MS methods optimized for specific types of …
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JGI@25: Using Team Science to Build Communities Around Data
… Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes … by more than 100 participants. Roughly 700 have been sequenced and annotated, representing 384 fungal families … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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