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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … one of the one of the fun things that I hope that I can express today is why secondary metabolism is interesting and … ALISON: Hmm. It kind of – it’s kind of like I’m smelling bacterial perfume. I mean – but it’s purposeful so it’s some …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … the JGI’s role in the project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & … of the opinion that on the geological timescale, that most bacterial natural product systems evolved, you know, a …
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … a few months ago when we were at the height of the initial spread of the pandemic in Europe. So if there are any kind of … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … data processing and analysis pipelines for the interpretation of microbiome omics data Developing … fraction, AF) have been computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes based …
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Characterization of a Planctomycetal Organelle: a Novel Bacterial Microcompartment for the Aerobic Degradation of Plant Saccharides
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … human and ecosystem health. But bacteria often fail to express their BGC molecules in the lab. By engineering … markers to visualize the bacterium colonizing plant roots — a proof-of-principle for investigating plant-microbe …
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Root-associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum
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Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota
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Waiting to Respire
Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More … led to the development of multicellular organisms. Not all bacterial lineages harnessed aerobic respiration when the … spouse of Lynn Margulis). The information was then used to predict the metabolic strategies applied by a common …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … Pasteur in France, the importance of methanogenesis and the presence of methanogens in nearly all types of anaerobic … and for the JGI Annual Meeting closes on March 11, 2019. Novel Yellowstone archaeon belongs to Korarchaeota Drs. Luke …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a … and the Bigelow Laboratory for Ocean Sciences described a novel technique to access high-quality genomic information … 200 microbial genomes that were mapped to nearly 30 major previously uncharted branches of the tree of life. Used in …
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