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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … them. Despite advances in the years since this landmark publication, SOD continued to sweep through dozens of …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … near this tree and so there was probably some historical evolutionary event where the DNA transferred from the fungus … the mentality that I’m looking at it with, you know, it’s within a species or microbial population, you have some set …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … basic ways. In “autopolyploids”, genome duplication occurs within a single species. By contrast, “allopolyploids” arise … but also the ability to understand the complicated evolutionary history of strawberry in such detail is …
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … and manufacturing. Genomic science lies at the heart of biology, providing the foundational knowledge to … and bioproducts: JGI user research advances understanding of biological processes that enable cost-effective energy …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the … Integrating genomics with metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal … role in soil carbon storage. Summary There are three types of fungal saprotrophs in the forest. White rot can break … The project was funded by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … step for many projects at the JGI. The quality of the starting material is one of the greatest predictors …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A roadmap for equitable reuse of public microbiome data
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Frederik Schulz
… Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and … metatranscriptomics, single cell genomics and phylogenomics) and machine learning to find novel functions …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. … cell’s membrane. Two decades ago, a team discovered a group of viruses that had in their genomes a surprising tool: a … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office …
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Novel Structural Elements within the Nonproteolytic Clostridium botulinum Type F Toxin Gene Cluster
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