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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …
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Genome Sequence of Thermofilum pendens Reveals an Exceptional Loss of Biosynthetic Pathways without Genome Reduction▿ †
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences … (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single Proposal webinar, inviting researchers to apply for access to multiple genomics and molecular characterization …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users … to diverse datasets that deepen our understanding of how organisms interact with each other and with their … Through its partnership with NERSC and the DOE Energy Sciences Network …
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Microbial species delineation using whole genome sequences
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Uncovering Novel Genomes from Earth’s Microbiomes
… gene clusters for novel secondary metabolites for multiple applications. Despite advances in sequencing … methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … of the microbial communities in the environmental samples without needing to isolate individual organisms, using …
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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, … Plant microbiomes hold the amazing ability to influence plant development, fitness and … We are using cutting-edge single-cell profiling methods, …
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The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the … The researcher then submits a proposal for consideration in the next … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of … projects that integrate the expertise and capabilities of multiple user facilities Investigators with DOE …   Learn more about our individual calls and other opportunities …
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Decontamination of MDA Reagents for Single Cell Whole Genome Amplification
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms … naturally produces high amounts of oil and can grow with or without light. The relatively small size of its genome also … modifications usually insert randomly in other algae, this organism lets scientists place new genes precisely where …
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