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Community Science Program
… undergo technical review by JGI staff, while the DOE ensures that they meet DOE mission relevance .  During … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Simon Roux
… the development of novel computational tools to identify virus sequences, the design of new experimental approaches to link viruses to their host(s), collaboration with JGI users for … rely on more than 10 years of expertise in the fields of virus ecology and virus genomics, where he has engaged in …
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Frequently Asked Questions: Proposal Submission
… proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New … The deliverables can range from raw sequence data to well-annotated … however, we will post the PIs’ names and the proposal titles. All data will be released in accordance with the JGI …
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Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome
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Nikos Kyrpides
… comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining the DOE … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… fungus to more than one-million base pairs in desert truffles — more than twice the size of the largest fungal … First, they scanned over 26,000 publicly available metagenomes in the JGI's IMG portal for mitochondrial …
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Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics
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At the Forefront of Terrestrial Virus Research
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DAS Tool for Genome Reconstruction from Metagenomes
… validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging … genomes from sequences generated from environmental samples. The work aligns with the ETOP mission of providing JGI … Reserve in California. Using DAS Tool on data from soil samples, researchers were able to reconstruct 79 minimally …
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Natural Prodcast Episode 19: Bill Fenical
… products, getting into the ocean and looking for molecules from the very beginning of the field. I learned a lot so … you here today. There’s a couple of things I want to make sure that we talk about. You have a JGI project going with … in a way that’s similar or analogous to what’s going on in terrestrial systems with plants making toxins and so on and …
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Astrovirology: how viruses enhance our understanding of life in the Universe
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Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
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