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Plant-Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … myriad of bacterial strains, whereby they can modulate host metabolism, gene expression and phenotype. We have recently … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis
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Candidatus Abditibacter, a novel genus within the Cryomorphaceae, thriving in the North Sea
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Candidatus Prosiliicoccus vernus, a spring phytoplankton bloom associated member of the Flavobacteriaceae
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Genomic basis for the unique phenotype of the alkaliphilic purple nonsulfur bacterium Rhodobaca bogoriensis
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match … characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … many organisms function, they have a sense of why nitrogen metabolisms can be so varied.  As evolution has progressed, …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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Comparative genomics of two ‘Candidatus Accumulibacter’ clades performing biological phosphorus removal
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Emiley Eloe-Fadrosh
… to pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … Futures … Metagenome Science Program … Education … Selected Publications … Awards and Service …
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Accelerating Metagenomics Discoveries with Deep Learning
Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 … in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … doing development of projects on a project-by-project basis. And the more time has gone on, the more we’ve become … She talks to lots of great scientists outside of secondary metabolism, and if you like what we’re doing here, you’ll …
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Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes
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