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Microbiome Data Science Team
… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new … Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in …
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Progress Reports: 2002–2020
… cards below to view downloadable pdfs of previous Progress Reports from the Joint Genome Institute.  … FY20 Progress Report … FY19 Progress Report … FY18 Progress Report … FY17 Progress Report … FY16 Progress Report … FY15 Progress Report … FY14 Progress Report … FY13 Progress Report …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable research and scientific … Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were sequenced by the JGI (isolates here , … available the annual JGI Genomics of Energy & Environment Meeting in San Francisco …
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FICUS Overview
… provides customized analysis, the JGI also participates in publication of results. … The ranked proposal list, along with a recommendation from management at JGI and the other participating …
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Natural Prodcast Episode 7: Ben Shen
… This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute in Jupiter Florida. This … to talk to you. And so this is the third international meeting on natural products, but as a new, I call it … on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a …
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Natural Prodcast Episode 17: Cassandra Quave
… The guest we have this week is Professor Cassandra Quave from Emory University, with joint appointments in the School … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … no way to be 100% sure that the chemistry that they’re even reporting on is from the plant they say they’re working on. …
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Natural Prodcast Episode 22: Alison Narayan
… Microbiology and Biotechnology (SIMB) Natural Products meeting earlier this year. And today we have our conversation with Professor Alison Narayan, from the University of Michigan. I hope she’ll accept this … So we’ll run things in like little Eppendorf tubes, or in 96, or 384 well plates. But then the fun really starts when …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen interest in the bioenergy and … at the JGI and KBase toward integrative biology and hear from researchers who are applying genomic sequence …
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User Advisory Committees
… offered, proposal review procedures and the annual meeting. The UEC also acts as a liaison to the user … external advisory body, the JAC includes representatives from all specialized JGI advisory and executive committees. … is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render …
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How to Submit Sequencing Samples
… it includes instructions on accessing sample-level reports and tracking statuses.  Please follow the steps … of Sample QC Sample Quality and Contamination JGI’s Genomic DNA Sample QC Protocol JGI’s Total RNA Sample QC … QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for sample collection and storage …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
… for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of Energy Joint Genome … and facilitates accurate and insightful comparative genomics studies. …
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From Competition to Cooperation
… published in  Nature Communications , the work was led by a consortium of researchers from the French National Institute for Agriculture, Food and … will assist researchers in moving toward functional genomics studies to learn more about the inner workings of …
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