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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and … mural at the Integrative Genomics Building was painted by Berkeley-based artist Nigel Sussman and dedicated at our …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … used  Fermentation Explorer ( GitHub ) with a series of large datasets. One test was to predict traits of more than … uncharacterized prokaryotes, including two bacteria isolated by their lab. KBase was used to rapidly assemble …
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Frequently Asked Questions: Project Management
… You can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products categorized by Science Program.  … The majority of JGI projects come from the user community. Find out about … proposal calls and proposal submission, as well as examples of approved proposals, please visit the Proposals FAQ .  …
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Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology
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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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User Support
… the JGI will move to a new login service, requiring the use of an ORCID account with two-factor authentication enabled … your Project Manager will facilitate project execution by: Verifying metadata and coordinating with IMG , GOLD and … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Genome Insider
… — JGI Users — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. Listen in to explore the data that illuminates biology, and hear how it could power our future. …
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Natural Prodcast Episode 22: Alison Narayan
… Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … sense. Yeah, it’s been a long time since I’ve actually isolated some proteins off the bench. I am well aware of the … Sure. ALISON NARAYAN: And so we usually start on small scale in the lab. So we’ll run things in like little …
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CSP Functional Genomics
… Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … Biodesign and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily … and analysis will be provided for free to the PI by the Department of Energy’s funding of the JGI. There is …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … we can find more things. Turns out some of the early genomes that were sequenced for, say, Streptomyces – they … squares are depictions of what are called domains within a larger protein. And so each of those domains is sort of like …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The … PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … shallow portions of the groundwater were nearly cleared of contamination. By 2020, the water was at contamination …
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Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample
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