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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of … that utilize microfluidics/microdroplet technology in order to enhance the quality of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … The JGI is inviting researchers using the U.S. Culture Collection Network (USCCN) to … The JGI performs sequencing, metabolomics and synthesis on behalf of …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US … to the community level. The Impact Rivers are transport systems, and their health is heavily reliant on the energy … was partially supported by awards from US Department of Energy (DOE) Office of Science, Office of Biological and …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. … U.S. Department of Energy (DOE) supports research programs for developing methods for converting plant biomass into … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User …
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IMG Webinar Series
… Find a series of webinars related to our Integrated Microbial Genomics & …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … species and studying diversity in complex biological systems. By making the tools and data available through … over 26,000 publicly available metagenomes in the JGI's IMG portal for mitochondrial ribosomal RNA sequences. The …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge capabilities to help advance … needs, the JGI deploys state-of-the-art sequencers and platforms dedicated to synthesis, single-cell analyses and …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI … of complex biological, earth, and environmental systems for energy and infrastructure security. In complement to …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data … Search in metagenomes is available from another JGI portal, IMG:  https://img.jgi.doe.gov 7.  Q: And what about … While are still working on finalizing the tree and related publication the tree is still in development and not …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This includes scaling the technologies and enabling … sites across entire genomes. This technology has been further scaled to a multiplexed DAP-seq (multiDAP-seq) method …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … The Secondary Metabolites Program targets the vast and underexplored reservoir of secondary metabolites produced by …
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