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Wildfire-dependent changes in soil microbiome diversity and function
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User Support
… collaborate with users to develop project requirements, define the scope of work and outline roles and responsibilities resulting in a formal … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … and agriculture. Understanding the compositions of river microbiomes—who the core microbes are and what they do—can … to monitor for and identify land use or water quality changes. Summary Rivers are key components of watershed …
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Partners
The JGI leverages its existing partnerships and develops others providing complementary expertise to advance the science and serve … DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC)—to provide access to …
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s … operations and scientific relevance and quality. … The Fungal & Algal Advisory Committee is chartered to offer …
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A plant host, Nicotiana benthamiana, enables the production and study of fungal lignin-degrading enzymes
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) … soil health can help mitigate the effects of climate change. The team’s study used samples from the area …
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Rapid changes in coastal ocean microbiomes uncoupled with shifts in environmental variables
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Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition.
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Simon Roux
… of new experimental approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral … the Viral Genomics group at the JGI to further explore the ecological and evolutionary drivers of virus-host dynamics … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida Everglades … Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was …
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